lts-workflow documentation

The lts-workflow module is a top-level module for workflow repositories developed by the SciLifeLab Bioinformatics Long-term Support team.

Note that this module doesn’t actually contain any workflows. Rather, it provides helper functions and documentation of a more general nature that relates to all workflows.

Contents:

• Installation
  • Stable release
  • From sources
• Configuration guide
  • Snakemake
  • Nextflow
• Developer guide
  • Summary
  • Setting up a local copy
  • Branching/development model
  • Issues
  • Adding a workflow
  • Continuous integration
• The workflow test environment
  • Running workflow tests
  • Additional options
  • Local conda installs
  • Test fixtures
  • Hints on developing workflows
  • Testing external data sources
• Docker images
• Workflows
• Credits
  • Development Lead
  • Contributors
• History
  • 0.2.5 (2018-04-05)
  • 0.2.4 (2017-11-14)
  • 0.2.3 (2017-11-14)
  • 0.2.2 (2017-11-13)
  • 0.2.1 (2017-09-26)
  • 0.2.0 (2017-03-21)
  • 0.1.1 (2017-03-01)
  • 0.1.0 (2017-02-12)
• lts_workflows
  • lts_workflows package

Indices and tables

• Index
• Module Index
• Search Page